RNA Baser-Sequence assembler and Contextual metadata integration|Minimum information about meta-genome sequence (MIGS/MIMS). RNA sequence assembly, RNA sequence analysis, contig editing, mutation detection, chromatogram viewer

RNA sequence assembly and RNA sequence metadata integration software

RNA Baser Sequence Assembler

Easy contextual metadata integration

RNA Baser Sequence Assembler represents an extension of DNA Baser Sequence Assembler, specialized in processing rRNA sequences. It is optimized for early integration of contextual metadata. This way, the metadata will stay attached to the primary sequence information throughout the complete workflow of sequence analysis, until final submission. In addition, RNA Baser Sequence Assembler is optimized for data exchange with standard non-commercial software used for rRNA sequence analysis and submission.

This is a joint project of HeracleSoftware, Ribocon GmbH and Max Planck Institute for Marine Microbiology in Bremen, Germany

How are we helping you to analyze your rRNA sequences faster?

1. RNA Baser Sequence Assembler is performing for you all the tedious steps in sequence assembly:

Automatic bad end trimming
Automatic ambiguous bases correction - More than 98% of ambiguities/mismatches are automatically corrected by RNA Baser without any user input.
Automatic vector removal

2. State of art graphic user interface designed with one purpose in mind: to minimize the user input:

Access with one single look to all needed data
None of the necessary functions are far than two mouse clicks
Synchronized display of the contig map, contig alignment and chromatograms.
Fast navigation between one ambiguous bases

3. Assemble thousands of DNA/RNA sample files in minutes at batch

Additionally to the classic single contig assembly mode, RNA Baser offers the possibility to assemble thousands of contigs (clone libraries) in batch mode with a single mouse click.

4. Fast integration of metadata in the sequence information

Keep sequence and environmental parameters information together; in this way, you will always know were your sequence is coming from
Fast submission to the databases of all relevant data

Batch assembly, single contig assembly, assemble to reference, contig map, bad end trimming, automatic error correction, chromatograms, rapid navigation through ambiguities, RNA sequence assembly

With RNA Baser , you can:

Assemble or align to a reference sequence
Batch assemble or align in groups of sequences by name
Automatically end clip
Automatically trim vector sequences
Import sequences from ABI, SCF, FASTA and SEQ
View and edit sequence traces
Mark specific regions (like discrepancies, low-quality areas in chromatograms) with visible colors and quickly navigate to these regions
Convert between different file formats (ABI,SCF, FASTA, multi-Fasta...)
other features

RNA Baser price

The package is offered at a very affordable price, making it ideal for universities, research institutions, or private companies performing DNA sequencing. Discounts apply if you purchase more than one license.

ARB Silva

ARB Silva is a comprehensive on-line resource for quality checked and aligned ribosomal RNA sequence data, free for academic use. SILVA provides comprehensive, quality checked and regularly updated databases of aligned small (16S/18S, SSU) and large subunit (23S/28S, LSU) ribosomal RNA (rRNA) sequences for all three domains of life (Bacteria, Archaea and Eukarya).

How to assemble a contig in 5 seconds

(click to enlarge)

Please feel free to send your feedback, questions or opinions to us.

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